HL_6XQE_223

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(4OC)

Length

11 nucleotides

Bulged bases

6XQE|1|2A|A|1913

QA status

Modified nucleotides: PSU, 5MU, 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XQE_223 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.4083

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6XQE|1|2A|G|1910
6XQE|1|2A|PSU|1911
6XQE|1|2A|A|1912
6XQE|1|2A|A|1913
6XQE|1|2A|C|1914
6XQE|1|2A|5MU|1915
6XQE|1|2A|A|1916
6XQE|1|2A|PSU|1917
6XQE|1|2A|A|1918
6XQE|1|2A|A|1919
6XQE|1|2A|4OC|1920

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA