HL_6XXA_003

3D structure

PDB id

6XXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Constitutive decay element CDE2 from human 3'UTR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AUAUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XXA_003 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3169

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XXA|3|A|A|9
6XXA|3|A|U|10
6XXA|3|A|A|11
6XXA|3|A|U|12
6XXA|3|A|U|13

Current chains

Chain A

CDE2

Nearby chains