HL_6XYW_005

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6XYW|1|1|A|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_005 not in the Motif Atlas

Geometric match to HL_4V9F_006

Geometric discrepancy: 0.1973

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6XYW|1|1|G|179
6XYW|1|1|A|180
6XYW|1|1|A|181
6XYW|1|1|A|182
6XYW|1|1|C|183
6XYW|1|1|A|184
6XYW|1|1|U|185
6XYW|1|1|C|186

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ax

AT4g31460/F3L17_30