HL_6XYW_006

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_006 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.1957

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

6XYW|1|1|C|210
6XYW|1|1|A|211
6XYW|1|1|A|212
6XYW|1|1|C|213
6XYW|1|1|C|214
6XYW|1|1|G|215

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AK

At4g22000

Chain Al

Ribosomal protein L18e/L15 superfamily protein