HL_6XYW_009

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUUGGAAGAU

Length

10 nucleotides

Bulged bases

6XYW|1|1|G|444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_009 not in the Motif Atlas

Geometric match to HL_8CRE_223

Geometric discrepancy: 0.2686

The information below is about HL_8CRE_223

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

6XYW|1|1|G|437
6XYW|1|1|U|438
6XYW|1|1|U|439
6XYW|1|1|G|440
6XYW|1|1|G|441
6XYW|1|1|A|442
6XYW|1|1|A|443
6XYW|1|1|G|444
6XYW|1|1|A|445
6XYW|1|1|U|446

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Au

50S ribosomal protein L24