HL_6XYW_015

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUAUGACG

Length

8 nucleotides

Bulged bases

6XYW|1|1|C|633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_015 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.2762

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6XYW|1|1|C|627
6XYW|1|1|U|628
6XYW|1|1|A|629
6XYW|1|1|U|630
6XYW|1|1|G|631
6XYW|1|1|A|632
6XYW|1|1|C|633
6XYW|1|1|G|634

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain As

AT1G52370 protein

Chain Au

50S ribosomal protein L24