HL_6XYW_019

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_019 not in the Motif Atlas

Homologous match to HL_5J7L_152

Geometric discrepancy: 0.4214

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6XYW|1|1|C|780
6XYW|1|1|C|781
6XYW|1|1|A|782
6XYW|1|1|A|783
6XYW|1|1|A|784
6XYW|1|1|G|785

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AD

Ribosomal protein L35

Chain Al

Ribosomal protein L18e/L15 superfamily protein