HL_6XYW_032

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUCAAUC

Length

7 nucleotides

Bulged bases

6XYW|1|1|U|1482, 6XYW|1|1|U|1486

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_032 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2364

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6XYW|1|1|G|1481
6XYW|1|1|U|1482
6XYW|1|1|C|1483
6XYW|1|1|A|1484
6XYW|1|1|A|1485
6XYW|1|1|U|1486
6XYW|1|1|C|1487

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain An

At5g09770

Chain As

AT1G52370 protein