HL_6XYW_033

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_033 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.1639

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

6XYW|1|1|C|1520
6XYW|1|1|G|1521
6XYW|1|1|A|1522
6XYW|1|1|A|1523
6XYW|1|1|A|1524
6XYW|1|1|G|1525

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ax

AT4g31460/F3L17_30