HL_6XYW_040

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

6XYW|1|1|U|2028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_040 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.1973

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

6XYW|1|1|C|2026
6XYW|1|1|U|2027
6XYW|1|1|U|2028
6XYW|1|1|C|2029
6XYW|1|1|G|2030
6XYW|1|1|G|2031

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA