HL_6XYW_055

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CCGACUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_055 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.2833

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XYW|1|1|C|2653
6XYW|1|1|C|2654
6XYW|1|1|G|2655
6XYW|1|1|A|2656
6XYW|1|1|C|2657
6XYW|1|1|U|2658
6XYW|1|1|G|2659
6XYW|1|1|G|2660

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AD

Ribosomal protein L35

Chain Al

Ribosomal protein L18e/L15 superfamily protein

Chain Aw

50S ribosomal protein L27