HL_6XYW_059

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

6XYW|1|1|G|2827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_059 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1529

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

6XYW|1|1|U|2826
6XYW|1|1|G|2827
6XYW|1|1|A|2828
6XYW|1|1|A|2829
6XYW|1|1|G|2830
6XYW|1|1|A|2831
6XYW|1|1|A|2832
6XYW|1|1|G|2833

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AE

Ribosomal protein

Chain Af

Putative ribosomal protein L6