HL_6XYW_067

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUUGAUUCUGG

Length

11 nucleotides

Bulged bases

6XYW|1|2|U|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_067 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1658

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6XYW|1|2|U|20
6XYW|1|2|U|21
6XYW|1|2|U|22
6XYW|1|2|G|23
6XYW|1|2|A|24
6XYW|1|2|U|25
6XYW|1|2|U|26
6XYW|1|2|C|27
6XYW|1|2|U|28
6XYW|1|2|G|29
6XYW|1|2|G|30

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bd

At1g64880

Chain Bk

Ribosomal protein S12, mitochondrial