HL_6XYW_072

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_072 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.2547

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6XYW|1|2|U|315
6XYW|1|2|U|316
6XYW|1|2|U|317
6XYW|1|2|U|318
6XYW|1|2|C|319
6XYW|1|2|G|320

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bc

Ribosomal protein S4, mitochondrial

Chain Bd

At1g64880

Chain Bg

40S ribosomal protein S15a-5

Chain Bp

Nucleic acid-binding, OB-fold-like protein