HL_6XYW_080

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGGUGAAAUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_080 not in the Motif Atlas

Homologous match to HL_5J7L_015

Geometric discrepancy: 0.1745

The information below is about HL_5J7L_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6XYW|1|2|G|684
6XYW|1|2|G|685
6XYW|1|2|G|686
6XYW|1|2|U|687
6XYW|1|2|G|688
6XYW|1|2|A|689
6XYW|1|2|A|690
6XYW|1|2|A|691
6XYW|1|2|U|692
6XYW|1|2|C|693

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bf

Ribosomal protein S7, mitochondrial

Chain Bj

Probable ribosomal protein S11, mitochondrial

Chain Bs

Ribosomal protein S21 family protein