HL_6XYW_086

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GAUACAACGC

Length

10 nucleotides

Bulged bases

6XYW|1|2|G|964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_086 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.2749

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6XYW|1|2|G|956
6XYW|1|2|A|957
6XYW|1|2|U|958
6XYW|1|2|A|959
6XYW|1|2|C|960
6XYW|1|2|A|961
6XYW|1|2|A|962
6XYW|1|2|C|963
6XYW|1|2|G|964
6XYW|1|2|C|965

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Bh

30S ribosomal protein S9, mitochondrial

Chain Bi

40S ribosomal protein S10, mitochondrial