HL_6XYW_089

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GUCAAGUC

Length

8 nucleotides

Bulged bases

6XYW|1|2|A|1084, 6XYW|1|2|G|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_089 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.2612

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6XYW|1|2|G|1081
6XYW|1|2|U|1082
6XYW|1|2|C|1083
6XYW|1|2|A|1084
6XYW|1|2|A|1085
6XYW|1|2|G|1086
6XYW|1|2|U|1087
6XYW|1|2|C|1088

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain Ba

Ribosomal protein S2, mitochondrial