HL_6XYW_093
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CUGUAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XYW_093 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.2853
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6XYW|1|2|C|1614
6XYW|1|2|U|1615
6XYW|1|2|G|1616
6XYW|1|2|U|1617
6XYW|1|2|A|1618
6XYW|1|2|A|1619
6XYW|1|2|G|1620
6XYW|1|2|G|1621
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain Bl
- Small ribosomal subunit protein S13, mitochondrial
- Chain Bm
- At2g34520
- Chain Br
- 40S ribosomal protein S19, mitochondrial
- Chain Bt
- 30S ribosomal protein S31, mitochondrial
- Chain Bw
- Mitochondrial 28S ribosomal protein S29-like protein
- Chain Bx
- 37S ribosomal protein S27
Coloring options: