HL_6XYW_105

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UAGAGUAUA

Length

9 nucleotides

Bulged bases

6XYW|1|1|U|1969

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XYW_105 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2966

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XYW|1|1|U|1964
6XYW|1|1|A|1965
6XYW|1|1|G|1966
6XYW|1|1|A|1967
6XYW|1|1|G|1968
6XYW|1|1|U|1969
6XYW|1|1|A|1970
6XYW|1|1|U|1971
6XYW|1|1|A|1972

Current chains

Chain 1

RNA (2842-MER)

Nearby chains