HL_6XZ7_011

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6XZ7|1|A|G|329, 6XZ7|1|A|A|330, 6XZ7|1|A|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZ7_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0608

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6XZ7|1|A|G|327
6XZ7|1|A|U|328
6XZ7|1|A|G|329
6XZ7|1|A|A|330
6XZ7|1|A|C|331
6XZ7|1|A|A|332
6XZ7|1|A|G|333
6XZ7|1|A|C|334
6XZ7|1|A|C|335

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24