3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUCG
Length
4 nucleotides
Bulged bases
6XZ7|1|A|U|1729
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZ7_043 not in the Motif Atlas
Geometric match to HL_5J7L_176
Geometric discrepancy: 0.2385
The information below is about HL_5J7L_176
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32346.4
Basepair signature
cWW-F
Number of instances in this motif group
9

Unit IDs

6XZ7|1|A|C|1728
6XZ7|1|A|U|1729
6XZ7|1|A|C|1730
6XZ7|1|A|G|1731

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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