HL_6XZ7_048

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6XZ7|1|A|A|1913, 6XZ7|1|A|C|1914, 6XZ7|1|A|A|1916

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZ7_048 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0982

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6XZ7|1|A|G|1910
6XZ7|1|A|PSU|1911
6XZ7|1|A|A|1912
6XZ7|1|A|A|1913
6XZ7|1|A|C|1914
6XZ7|1|A|3TD|1915
6XZ7|1|A|A|1916
6XZ7|1|A|PSU|1917
6XZ7|1|A|A|1918
6XZ7|1|A|A|1919
6XZ7|1|A|C|1920

Current chains

Chain A

23S rRNA

Nearby chains

Chain f

Transfer RNA; tRNA

Chain g

Transfer RNA; tRNA