HL_6XZ7_058

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZ7_058 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.0652

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZ7|1|A|C|2374
6XZ7|1|A|G|2375
6XZ7|1|A|A|2376
6XZ7|1|A|A|2377
6XZ7|1|A|A|2378
6XZ7|1|A|G|2379

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain b

50S ribosomal protein L33