HL_6XZ7_062

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZ7_062 not in the Motif Atlas

Homologous match to HL_5J7L_195

Geometric discrepancy: 0.0982

The information below is about HL_5J7L_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XZ7|1|A|C|2551
6XZ7|1|A|OMU|2552
6XZ7|1|A|G|2553
6XZ7|1|A|U|2554
6XZ7|1|A|U|2555
6XZ7|1|A|C|2556
6XZ7|1|A|G|2557

Current chains

Chain A

23S rRNA

Nearby chains

Chain g

Transfer RNA; tRNA