3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6XZ7|1|A|G|2751, 6XZ7|1|A|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZ7_066 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.0599
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6XZ7|1|A|C|2745
6XZ7|1|A|U|2746
6XZ7|1|A|G|2747
6XZ7|1|A|A|2748
6XZ7|1|A|A|2749
6XZ7|1|A|A|2750
6XZ7|1|A|G|2751
6XZ7|1|A|C|2752
6XZ7|1|A|A|2753
6XZ7|1|A|U|2754
6XZ7|1|A|C|2755
6XZ7|1|A|U|2756
6XZ7|1|A|A|2757
6XZ7|1|A|A|2758
6XZ7|1|A|G|2759

Current chains

Chain A
23S rRNA

Nearby chains

Chain G
50S ribosomal protein L6
Chain J
50S ribosomal protein L13
Chain e
50S ribosomal protein L36

Coloring options:


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