HL_6XZA_009

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6XZA|1|A1|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1122

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

6XZA|1|A1|C|342
6XZA|1|A1|U|343
6XZA|1|A1|A|344
6XZA|1|A1|C|345
6XZA|1|A1|G|346
6XZA|1|A1|G|347

Current chains

Chain A1

16S rRNA

Nearby chains

Chain K2

50S ribosomal protein L14

Chain P2

50S ribosomal protein L19