HL_6XZA_014

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1027

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XZA|1|A1|G|617
6XZA|1|A1|C|618
6XZA|1|A1|U|619
6XZA|1|A1|C|620
6XZA|1|A1|A|621
6XZA|1|A1|A|622
6XZA|1|A1|C|623

Current chains

Chain A1

16S rRNA

Nearby chains

Chain D1

30S ribosomal protein S4

Chain P1

30S ribosomal protein S16