HL_6XZA_022

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2242

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6XZA|1|A1|A|1012
6XZA|1|A1|G|1013
6XZA|1|A1|A|1014
6XZA|1|A1|G|1015
6XZA|1|A1|A|1016
6XZA|1|A1|U|1017

Current chains

Chain A1

16S rRNA

Nearby chains

Chain N1

30S ribosomal protein S14

Chain S1

30S ribosomal protein S19