HL_6XZA_024

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_024 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0843

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZA|1|A1|U|1076
6XZA|1|A1|G|1077
6XZA|1|A1|U|1078
6XZA|1|A1|G|1079
6XZA|1|A1|A|1080
6XZA|1|A1|A|1081

Current chains

Chain A1

16S rRNA

Nearby chains

Chain B1

30S ribosomal protein S2

Chain E1

30S ribosomal protein S5