HL_6XZA_036

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6XZA|1|A2|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_036 not in the Motif Atlas

Geometric match to HL_4AY2_001

Geometric discrepancy: 0.2722

The information below is about HL_4AY2_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6XZA|1|A2|U|137
6XZA|1|A2|U|138
6XZA|1|A2|U|139
6XZA|1|A2|C|140
6XZA|1|A2|G|141
6XZA|1|A2|A|142

Current chains

Chain A2

23S rRNA

Nearby chains

Chain T2

50S ribosomal protein L23