HL_6XZA_038

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6XZA|1|A2|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_038 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.0532

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6XZA|1|A2|G|194
6XZA|1|A2|A|195
6XZA|1|A2|A|196
6XZA|1|A2|A|197
6XZA|1|A2|C|198
6XZA|1|A2|A|199
6XZA|1|A2|U|200
6XZA|1|A2|C|201

Current chains

Chain A2

23S rRNA

Nearby chains

Chain L2

50S ribosomal protein L15

Chain X2

50S ribosomal protein L28