HL_6XZA_053

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_053 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1008

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6XZA|1|A2|G|712
6XZA|1|A2|G|713
6XZA|1|A2|U|714
6XZA|1|A2|A|715
6XZA|1|A2|A|716
6XZA|1|A2|C|717
6XZA|1|A2|A|718
6XZA|1|A2|C|719

Current chains

Chain A2

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain C2

50S ribosomal protein L2

Chain O1

30S ribosomal protein S15