HL_6XZA_055

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

6XZA|1|A2|A|781, 6XZA|1|A2|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_055 not in the Motif Atlas

Homologous match to HL_7RQB_024

Geometric discrepancy: 0.0493

The information below is about HL_7RQB_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74322.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

4

Unit IDs

6XZA|1|A2|U|779
6XZA|1|A2|G|780
6XZA|1|A2|A|781
6XZA|1|A2|A|782
6XZA|1|A2|A|783
6XZA|1|A2|G|784
6XZA|1|A2|G|785

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2