HL_6XZA_072

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

6XZA|1|A2|A|1614, 6XZA|1|A2|A|1616

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_072 not in the Motif Atlas

Homologous match to HL_5J7L_173

Geometric discrepancy: 0.0521

The information below is about HL_5J7L_173

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6XZA|1|A2|C|1612
6XZA|1|A2|G|1613
6XZA|1|A2|A|1614
6XZA|1|A2|C|1615
6XZA|1|A2|A|1616
6XZA|1|A2|C|1617
6XZA|1|A2|6MZ|1618
6XZA|1|A2|G|1619

Current chains

Chain A2

23S rRNA

Nearby chains

Chain S2

50S ribosomal protein L22

Chain c2

50S ribosomal protein L34