HL_6XZA_082

3D structure

PDB id

6XZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

6XZA|1|A2|A|2031, 6XZA|1|A2|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZA_082 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0636

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6XZA|1|A2|G|2027
6XZA|1|A2|U|2028
6XZA|1|A2|G|2029
6XZA|1|A2|6MZ|2030
6XZA|1|A2|A|2031
6XZA|1|A2|G|2032
6XZA|1|A2|A|2033
6XZA|1|A2|U|2034
6XZA|1|A2|G|2035
6XZA|1|A2|C|2036

Current chains

Chain A2

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L3

Chain R2

50S ribosomal protein L21

Chain a2

50S ribosomal protein L32