HL_6XZA_106
3D structure
- PDB id
- 6XZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome in complex with dirithromycin, and deacylated tRNA(iMet) (focused classification).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- G(5MU)(PSU)CAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6XZA_106 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.1351
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
6XZA|1|f2|G|53
6XZA|1|f2|5MU|54
6XZA|1|f2|PSU|55
6XZA|1|f2|C|56
6XZA|1|f2|A|57
6XZA|1|f2|A|58
6XZA|1|f2|A|59
6XZA|1|f2|U|60
6XZA|1|f2|C|61
Current chains
- Chain f2
- Deacylated tRNAi(Met)
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain F2
- 50S ribosomal protein L5
- Chain M2
- 50S ribosomal protein L16
Coloring options: