HL_6XZB_004

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_004 not in the Motif Atlas

Homologous match to HL_5J7L_004

Geometric discrepancy: 0.1579

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZB|1|A1|C|186
6XZB|1|A1|G|187
6XZB|1|A1|C|188
6XZB|1|A1|A|189
6XZB|1|A1|A|190
6XZB|1|A1|G|191

Current chains

Chain A1

16S rRNA

Nearby chains

Chain T1

30S ribosomal protein S20