HL_6XZB_006

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6XZB|1|A1|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0745

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6XZB|1|A1|G|259
6XZB|1|A1|G|260
6XZB|1|A1|U|261
6XZB|1|A1|A|262
6XZB|1|A1|A|263
6XZB|1|A1|C|264
6XZB|1|A1|G|265
6XZB|1|A1|G|266
6XZB|1|A1|C|267

Current chains

Chain A1

16S rRNA

Nearby chains

Chain Q1

30S ribosomal protein S17

Chain T1

30S ribosomal protein S20