HL_6XZB_013

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GCAGCCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_013 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2729

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6XZB|1|A1|G|521
6XZB|1|A1|C|522
6XZB|1|A1|A|523
6XZB|1|A1|G|524
6XZB|1|A1|C|525
6XZB|1|A1|C|526
6XZB|1|A1|C|528

Current chains

Chain A1

16S rRNA

Nearby chains

Chain L1

30S ribosomal protein S12