HL_6XZB_018

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6XZB|1|A1|C|841, 6XZB|1|A1|U|842, 6XZB|1|A1|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2675

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6XZB|1|A1|C|840
6XZB|1|A1|C|841
6XZB|1|A1|U|842
6XZB|1|A1|U|843
6XZB|1|A1|G|844
6XZB|1|A1|A|845
6XZB|1|A1|G|846

Current chains

Chain A1

16S rRNA

Nearby chains

Chain B1

30S ribosomal protein S2

Chain R1

30S ribosomal protein S18