3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
CGCGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_028 not in the Motif Atlas
Homologous match to HL_4LFB_028
Geometric discrepancy: 0.1225
The information below is about HL_4LFB_028
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6XZB|1|A1|C|1265
6XZB|1|A1|G|1266
6XZB|1|A1|C|1267
6XZB|1|A1|G|1268
6XZB|1|A1|A|1269
6XZB|1|A1|G|1270

Current chains

Chain A1
16S rRNA

Nearby chains

Chain M1
30S ribosomal protein S13

Coloring options:


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