HL_6XZB_029

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_029 not in the Motif Atlas

Homologous match to HL_5J7L_028

Geometric discrepancy: 0.0822

The information below is about HL_5J7L_028

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6XZB|1|A1|C|1314
6XZB|1|A1|U|1315
6XZB|1|A1|G|1316
6XZB|1|A1|C|1317
6XZB|1|A1|A|1318
6XZB|1|A1|A|1319
6XZB|1|A1|C|1320
6XZB|1|A1|U|1321
6XZB|1|A1|C|1322
6XZB|1|A1|G|1323

Current chains

Chain A1

16S rRNA

Nearby chains

Chain M1

30S ribosomal protein S13

Chain N1

30S ribosomal protein S14

Chain S1

30S ribosomal protein S19