3D structure

PDB id
6XZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
6XZB|1|A2|A|125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6XZB_035 not in the Motif Atlas
Homologous match to HL_5J7L_136
Geometric discrepancy: 0.0724
The information below is about HL_5J7L_136
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82710.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6XZB|1|A2|G|123
6XZB|1|A2|G|124
6XZB|1|A2|A|125
6XZB|1|A2|A|126
6XZB|1|A2|A|127
6XZB|1|A2|C|128

Current chains

Chain A2
23S rRNA

Nearby chains

Chain T2
50S ribosomal protein L23
Chain c2
50S ribosomal protein L34

Coloring options:


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