HL_6XZB_043

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6XZB|1|A2|G|329, 6XZB|1|A2|A|330, 6XZB|1|A2|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_043 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0608

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6XZB|1|A2|G|327
6XZB|1|A2|U|328
6XZB|1|A2|G|329
6XZB|1|A2|A|330
6XZB|1|A2|C|331
6XZB|1|A2|A|332
6XZB|1|A2|G|333
6XZB|1|A2|C|334
6XZB|1|A2|C|335

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain U2

50S ribosomal protein L24