HL_6XZB_047

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6XZB|1|A2|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_047 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0638

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZB|1|A2|C|487
6XZB|1|A2|G|488
6XZB|1|A2|G|489
6XZB|1|A2|C|490
6XZB|1|A2|G|491
6XZB|1|A2|A|492
6XZB|1|A2|G|493

Current chains

Chain A2

23S rRNA

Nearby chains

Chain S2

50S ribosomal protein L22