HL_6XZB_056

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6XZB|1|A2|U|827, 6XZB|1|A2|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_056 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.044

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6XZB|1|A2|U|826
6XZB|1|A2|U|827
6XZB|1|A2|U|828
6XZB|1|A2|A|829
6XZB|1|A2|G|830
6XZB|1|A2|G|831

Current chains

Chain A2

23S rRNA

Nearby chains

Chain L2

50S ribosomal protein L15