HL_6XZB_078

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

6XZB|1|A2|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_078 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1363

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6XZB|1|A2|C|1806
6XZB|1|A2|G|1807
6XZB|1|A2|A|1808
6XZB|1|A2|A|1809
6XZB|1|A2|A|1810
6XZB|1|A2|G|1811

Current chains

Chain A2

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L2

Chain X2

50S ribosomal protein L28