HL_6XZB_086

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6XZB|1|A2|A|2268, 6XZB|1|A2|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_086 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0549

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6XZB|1|A2|C|2264
6XZB|1|A2|U|2265
6XZB|1|A2|A|2266
6XZB|1|A2|A|2267
6XZB|1|A2|A|2268
6XZB|1|A2|G|2269
6XZB|1|A2|A|2270
6XZB|1|A2|G|2271
6XZB|1|A2|U|2272
6XZB|1|A2|A|2273
6XZB|1|A2|A|2274
6XZB|1|A2|C|2275
6XZB|1|A2|G|2276

Current chains

Chain A2

23S rRNA

Nearby chains

Chain M2

50S ribosomal protein L16

Chain W2

50S ribosomal protein L27