HL_6XZB_089

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6XZB_089 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.0772

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6XZB|1|A2|U|2356
6XZB|1|A2|G|2357
6XZB|1|A2|A|2358
6XZB|1|A2|C|2359
6XZB|1|A2|G|2360
6XZB|1|A2|G|2361

Current chains

Chain A2

23S rRNA

Nearby chains

Chain L2

50S ribosomal protein L15

Chain W2

50S ribosomal protein L27

Chain d2

50S ribosomal protein L35