HL_6Y0G_012

3D structure

PDB id

6Y0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome in classical-PRE state

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

6Y0G|1|L5|U|224, 6Y0G|1|L5|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y0G_012 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1238

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6Y0G|1|L5|C|222
6Y0G|1|L5|G|223
6Y0G|1|L5|U|224
6Y0G|1|L5|G|225
6Y0G|1|L5|G|226

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26